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Flow Cytometry and Cell Sorting

The SCIF is able to assist in design of flow cytometry and FACS experiments.  Users can have their samples run with operator assistance, or can run their samples independently with the proper training. We also recommend using FluoroFinder for flow cytometry panel design. Please click here to visit our UC Merced-specific FluoroFinder page. Below are the SCIF instruments and their specifications:

Bio-Rad ZE5 - Flow cytometer

5 laser system: 355nm UV, 405nm Violet, 488nm Blue, 561nm Yellow, 640nm Red

Designed for high throughput ananlysis of up to 27 color panels

Automated tube and plate loading ability up to 384-well plates

Small particle detection

Instrument configuration and fluorochrome guide

21-color panel example voltages and compensation matrix

BD LSR II - Flow cytometer

4 laser system: 355nm, 405nm, 488nm, 633nm

Designed for high throughput ananlysis of up to 11 color panels

Instrument configuration and fluorochrome guide

BD FACS Aria III - Flow cytometer/Cell Sorter with Aerosol Management

4 laser system: 405nm, 488nm, 561nm, 633nm

561 laser allows maximal detection of dsRed and mCherry

Aerosol Management System is required for BSL-2 applications (eg. human cells, infectious agents)

Instrument configuration and fluorochrome guide

BD FACS Aria II - Flow cytometer/Cell Sorter

3 laser system: 407nm, 488nm, 633nm

Instrument configuration and fluorochrome guide

Analysis Workstation

We have a workstation running FlowJo V10 located in SE153. The workstation is designed to be used for post-acquision analysis. It is free of use, saving you the expense of purchasing your own flow analysis software.