Publications using SCIF Cytometry resources
last updated 2/22/24
2023
Emery JM, Chicana B, Taglinao H, Ponce C, Donham C, Padmore H, Sebastian A, Trasti SL, Manilay JO: Vhl deletion in Dmp1 -expressing cells alters MEP metabolism and promotes stress erythropoiesis. bioRxiv 2023
Kongsomboonvech AK, García-López L, Njume F, Rodriguez F, Souza SP, Rosenberg A, Jensen KDC: Variation in CD8 T cell IFNγ differentiation to strains of. Front Cell Infect Microbiol 2023;13:1130965.
López DA, Otsuka KS, Apostol AC, Posada J, Sánchez-Arcila JC, Jensen KD, Beaudin AE: Both maternal IFNγ exposure and acute prenatal infection with Toxoplasma gondii activate fetal hematopoietic stem cells. EMBO J 2023;42:e112693.
López DA, Beaudin AE: Isolation and Characterization of Fetal Liver Hematopoietic Stem Cells. Methods Mol Biol 2023;2567:99-112.
Gravano DM, Rieger AM, Nettenstrom L, Hall C, Ferrer-Font L: Shared resource lab (SRL) strategies for supporting high-dimensional cytometry data analysis. Cytometry A 2023
2022
Chicana, B., N. Abbasizadeh, C. Burns, H. Taglinao, J. A. Spencer, and J. O. Manilay. 2022. Deletion of Vhl in Dmp1-Expressing Cells Causes Microenvironmental Impairment of B Cell Lymphopoiesison of. Front Immunol 13: 780945.
Davidian, D., M. LeGro, P. G. Barghouth, S. Rojas, B. Ziman, E. I. Maciel, D. Ardell, A. L. Escobar, and N. J. Oviedo. 2022. Restoration of DNA integrity and the cell cycle by electric stimulation in planarian tissues damaged by ionizing radiation. J Cell Sci 135.
Hum, N. R., A. Sebastian, K. A. Martin, N. D. Rios-Arce, S. F. Gilmore, D. M. Gravano, E. K. Wheeler, M. A. Coleman, and G. G. Loots. 2022. IL-17A Increases Doxorubicin Efficacy in Triple Negative Breast Cancer. Front Oncol 12: 928474.
López DA, Apostol AC, Lebish EJ, Valencia CH, Romero-Mulero MC, Pavlovich PV, Hernandez GE, Forsberg EC, Cabezas-Wallscheid N, Beaudin AE: Prenatal inflammation perturbs murine fetal hematopoietic development and causes persistent changes to postnatal immunity. Cell Rep 2022;41:111677.
Chang HM, Vazquez CI, Shiu RF, Chin WC: Temperature Effects on Effluent Microgel Formation. Polymers (Basel) 2022;14
2021
Donham, C., B. Chicana, A. G. Robling, A. Mohamed, S. Elizaldi, M. Chi, B. Freeman, A. Millan, D. K. Murugesh, N. R. Hum, A. Sebastian, G. G. Loots, and J. O. Manilay. 2021. Sclerostin Depletion Induces Inflammation in the Bone Marrow of Mice. Int J Mol Sci 22.
Souza, S. P., S. D. Splitt, J. C. Sànchez-Arcila, J. A. Alvarez, J. N. Wilson, S. Wizzard, Z. Luo, N. Baumgarth, and K. D. C. Jensen. 2021. Genetic mapping reveals Nfkbid as a central regulator of humoral immunity to Toxoplasma gondii. PLoS Pathog 17: e1010081.
Valentine KM, Mullins GN, Davalos OA, Seow LW, Hoyer KK. 2021. CD8 follicular T cells localize throughout the follicle during germinal center reactions and maintain cytolytic and helper properties. J Autoimmun 123: 102690
Sandin SI, Gravano DM, Randolph CJ, Sharma M, de Alba E. 2021. Engineering of Saposin C Protein Chimeras for Enhanced Cytotoxicity and Optimized Liposome Binding Capability. Pharmaceutics 13
Diep AL, Tejeda-Garibay S, Miranda N, Hoyer KK. 2021. Macrophage and Dendritic Cell Activation and Polarization in Response to. J Fungi (Basel) 7
Guo, Y., H. Liu, H. Xiao, M. Yuan, Y. Liu, V. Sedlařík, W. C. Chin, J. Liu, L. Guo, and C. Li. 2021. Self-assembled Camptothecin derivatives - Curcuminoids conjugate for combinatorial chemo-photodynamic therapy to enhance anti-tumor efficacy. J Photochem Photobiol B 215: 112124.
Millan, A. J., B. A. Hom, J. B. Libang, S. Sindi, and J. O. Manilay. 2021. Evidence for Prescribed NK Cell Ly-49 Developmental Pathways in Mice. J Immunol.
2020
Kongsomboonvech AK, Rodriguez F, Diep AL, Justice BM, Castallanos BE, et al. 2020. Naïve CD8 T cell IFNγ responses to a vacuolar antigen are regulated by an inflammasome-independent NLRP3 pathway and Toxoplasma gondii ROP5. PLoS Pathog 16: e1008327
Gravano, D. M., U. Chakraborty, I. Pesce, and M. Thomson. 2020. Solutions for Shared Resource Lab Remote Quality Control and Instrument Troubleshooting during a Pandemic. Cytometry A.
Jahan, B., and K. E. McCloskey. 2020. Differentiation and expansion of endothelial cells requires pre-optimization of KDR+ expression kinetics. Stem Cell Res 42: 101685.
Barghouth, P. G., P. Karabinis, A. Venegas, and N. J. Oviedo. 2020. Poly(ADP-Ribose) Polymerase-3 Regulates Regeneration in Planarians. Int J Mol Sci 21.
Shiu, R. F., C. I. Vazquez, Y. Y. Tsai, G. V. Torres, C. S. Chen, P. H. Santschi, A. Quigg, and W. C. Chin. 2020. Nano-plastics induce aquatic particulate organic matter (microgels) formation. Sci Total Environ 706: 135681.
Ziman, B., P. Karabinis, P. Barghouth, and N. J. Oviedo. 2020. Sirtuin-1 regulates organismal growth by altering feeding behavior and intestinal morphology in planarians. J Cell Sci 133.
Mullins, G. N., K. M. Valentine, M. Al-Kuhlani, D. Davini, K. D. C. Jensen, and K. K. Hoyer. 2020. T cell signaling and Treg dysfunction correlate to disease kinetics in IL-2Rα-KO autoimmune mice. Sci Rep 10: 21994.
Shiu, R. F., C. I. Vazquez, C. Y. Chiang, M. H. Chiu, C. S. Chen, C. W. Ni, G. C. Gong, A. Quigg, P. H. Santschi, and W. C. Chin. 2020. Nano- and microplastics trigger secretion of protein-rich extracellular polymeric substances from phytoplankton. Sci Total Environ 748: 141469.
Chiang, C. Y., G. D. Ligunas, W. C. Chin, and C. W. Ni. 2020. Efficient Nonviral Stable Transgenesis Mediated by Retroviral Integrase. Mol Ther Methods Clin Dev 17: 1061-1070.
2019
Leung, G. A., T. Cool, C. H. Valencia, A. Worthington, A. E. Beaudin, and E. C. Forsberg. 2019. The lymphoid-associated interleukin 7 receptor (IL7R) regulates tissue-resident macrophage development. Development 146.
Millan, A. J., S. R. Elizaldi, E. M. Lee, J. O. Aceves, D. Murugesh, G. G. Loots, and J. O. Manilay. 2019. Sostdc1 Regulates NK Cell Maturation and Cytotoxicity. J Immunol 202: 2296-2306.
Wong, L., A. Kumar, B. Gabela-Zuniga, J. Chua, G. Singh, C. L. Happe, A. J. Engler, Y. Fan, and K. E. McCloskey. 2019. Substrate stiffness directs diverging vascular fates. Acta Biomater 96: 321-329.
Chiu, M. H., C. I. Vazquez, R. F. Shiu, C. Le, N. R. Sanchez, A. Kagiri, C. A. Garcia, C. H. Nguyen, S. M. Tsai, S. Zhang, C. Xu, P. H. Santschi, A. Quigg, and W. C. Chin. 2019. Impact of exposure of crude oil and dispersant (Corexit) on aggregation of extracellular polymeric substances. Sci Total Environ 657: 1535-1542.
2018
Madfis, N., Z. Lin, A. Kumar, S. A. Douglas, M. O. Platt, Y. Fan, and K. E. McCloskey. 2018. Co-emergence of Specialized Endothelial Cells from Embryonic Stem Cells. Stem Cells Dev.
Valentine, K. M., D. Davini, T. J. Lawrence, G. N. Mullins, M. Manansala, M. Al-Kuhlani, J. M. Pinney, J. K. Davis, A. E. Beaudin, S. S. Sindi, D. M. Gravano, and K. K. Hoyer. 2018. CD8 Follicular T Cells Promote B Cell Antibody Class Switch in Autoimmune Disease. J Immunol.
Yee, C. S., J. O. Manilay, J. C. Chang, N. R. Hum, D. K. Murugesh, J. Bajwa, M. E. Mendez, A. E. Economides, D. J. Horan, A. G. Robling, and G. G. Loots. 2018. Conditional Deletion of Sost in MSC-derived lineages Identifies Specific Cell Type Contributions to Bone Mass and B Cell Development. J Bone Miner Res.
Thiruvalluvan, M., P. G. Barghouth, A. Tsur, L. Broday, and N. J. Oviedo. 2018. SUMOylation controls stem cell proliferation and regional cell death through Hedgehog signaling in planarians. Cell Mol Life Sci 75: 1285-1301.
Splitt, S. D., S. P. Souza, K. M. Valentine, B. E. Castellanos, A. B. Curd, K. K. Hoyer, and K. D. C. Jensen. 2018. PD-L1, TIM-3, and CTLA-4 blockade fail to promote resistance to secondary infection with virulent strains of. Infect Immun.
Loots, G. G., A. G. Robling, J. C. Chang, D. K. Murugesh, J. Bajwa, C. Carlisle, J. O. Manilay, A. Wong, C. E. Yellowley, and D. C. Genetos. 2018. Vhl deficiency in osteocytes produces high bone mass and hematopoietic defects. Bone 116: 307-314.
Davini, D., F. Naeem, A. Phong, M. Al-Kuhlani, K. M. Valentine, J. McCarty, D. M. Ojcius, D. M. Gravano, and K. K. Hoyer. 2018. Elevated regulatory T cells at diagnosis of Coccidioides infection associates with chronicity in pediatric patients. J Allergy Clin Immunol 142: 1971-1974.e1977.
Sun, L., W. C. Chin, M. H. Chiu, C. Xu, P. Lin, K. A. Schwehr, A. Quigg, and P. H. Santschi. 2018. Sunlight induced aggregation of dissolved organic matter: Role of proteins in linking organic carbon and nitrogen cycling in seawater. Sci Total Environ 654: 872-877.
2017
Sun, L., C. Xu, S. Zhang, P. Lin, K. A. Schwehr, A. Quigg, M. H. Chiu, W. C. Chin, and P. H. Santschi. 2017. Light-induced aggregation of microbial exopolymeric substances. Chemosphere 181: 675-681.
Singh, S. J., W. Turner, D. E. Glaser, K. E. McCloskey, and F. V. Filipp. 2017. Metabolic shift in density-dependent stem cell differentiation. Cell Commun Signal 15: 44.
Byrne, A., A. E. Beaudin, H. E. Olsen, M. Jain, C. Cole, T. Palmer, R. M. DuBois, E. C. Forsberg, M. Akeson, and C. Vollmers. 2017. Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells. Nat Commun 8: 16027.
2016
Collette, N. M., C. S. Yee, N. R. Hum, D. K. Murugesh, B. A. Christiansen, L. Xie, A. N. Economides, J. O. Manilay, A. G. Robling, and G. G. Loots. 2016. Sostdc1 deficiency accelerates fracture healing by promoting the expansion of periosteal mesenchymal stem cells. Bone 88: 20-30.
Gravano, D. M., M. Al-Kuhlani, D. Davini, P. D. Sanders, J. O. Manilay, and K. K. Hoyer. 2016. CD8(+) T cells drive autoimmune hematopoietic stem cell dysfunction and bone marrow failure. J Autoimmun.
Peiris, T. H., M. E. García-Ojeda, and N. J. Oviedo. 2016. Alternative flow cytometry strategies to analyze stem cells and cell death in planarians. Regeneration (Oxf) 3: 123-135.
Peiris, T. H., D. Ramirez, P. G. Barghouth, U. Ofoha, D. Davidian, F. Weckerle, and N. J. Oviedo. 2016. Regional signals in the planarian body guide stem cell fate in the presence of genomic instability. Development 143: 1697-1709.
Peiris, T. H., D. Ramirez, P. G. Barghouth, and N. J. Oviedo. 2016. The Akt signaling pathway is required for tissue maintenance and regeneration in planarians. BMC Dev Biol 16: 7.
Glaser, D. E., W. S. Turner, N. Madfis, L. Wong, J. Zamora, N. White, S. Reyes, A. B. Burns, A. Gopinathan, and K. E. McCloskey. 2016. Multifactorial Optimizations for Directing Endothelial Fate from Stem Cells. PLoS One 11: e0166663.
Thompson, H. L., N. van Rooijen, B. T. McLelland, and J. O. Manilay. 2016. F4/80(+) Host Macrophages Are a Barrier to Murine Embryonic Stem Cell-Derived Hematopoietic Progenitor Engraftment In Vivo. J Immunol Res 2016: 2414906.
2015
Barghouth, P. G., M. Thiruvalluvan, and N. J. Oviedo. 2015. Bioelectrical regulation of cell cycle and the planarian model system. Biochim Biophys Acta 1848: 2629-2637.
2014
Glaser, D. E., A. B. Burns, R. Hatano, M. Medrzycki, Y. Fan, and K. E. McCloskey. 2014. Specialized mouse embryonic stem cells for studying vascular development. Stem Cells Cloning 7: 79-88.
Sa, S., L. Wong, and K. E. McCloskey. 2014. Combinatorial fibronectin and laminin signaling promote highly efficient cardiac differentiation of human embryonic stem cells. Biores Open Access 3: 150-161.
Thompson, H. L., B. T. McLelland, and J. O. Manilay. 2014. Indirect immune recognition of mouse embryonic stem cell-derived hematopoietic progenitors in vitro. Exp Hematol 42: 347-359.e345.
2013
Blancas, A. A., L. E. Wong, D. E. Glaser, and K. E. McCloskey. 2013. Specialized tip/stalk-like and phalanx-like endothelial cells from embryonic stem cells. Stem Cells Dev 22: 1398-1407.
Hatano, R., K. Mercurio, J. I. Luna, D. E. Glaser, V. J. Leppert, and K. E. McCloskey. 2013. Endothelial cells derived from embryonic stem cells respond to cues from topographical surface patterns. J Biol Eng 7: 18.
Linder, G. E., P. D. Chuntova, B. T. McLelland, L. Añó, U. C. Obodo, N. J. Crider, D. J. Matthes, M. E. García-Ojeda, J. O. Manilay, and D. Chatterjea. 2013. Semaphorin 4A is dynamically regulated during thymocyte development in mice. Cell Immunol 281: 150-158.
2012
Cain, C. J., R. Rueda, B. McLelland, N. M. Collette, G. G. Loots, and J. O. Manilay. 2012. Absence of sclerostin adversely affects B-cell survival. J Bone Miner Res 27: 1451-1461.
Ciriza, J., D. Hall, A. Lu, J. R. De Sena, M. Al-Kuhlani, and M. E. García-Ojeda. 2012. Single-cell analysis of murine long-term hematopoietic stem cells reveals distinct patterns of gene expression during fetal migration. PLoS One 7: e30542.
Peiris, T. H., F. Weckerle, E. Ozamoto, D. Ramirez, D. Davidian, M. E. García-Ojeda, and N. J. Oviedo. 2012. TOR signaling regulates planarian stem cells and controls localized and organismal growth. J Cell Sci 125: 1657-1665.
Sa, S., and K. McCloskey. 2012. Activin A and BMP4 Signaling for Efficient Cardiac Differentiation of H7 and H9 Human Embryonic Stem Cells. J Stem Cells Regen Med 8: 198-202.
Sa, S., and K. E. McCloskey. 2012. Stage-specific cardiomyocyte differentiation method for H7 and H9 human embryonic stem cells. Stem Cell Rev 8: 1120-1128.
2011
Blancas, A. A., C. S. Chen, S. Stolberg, and K. E. McCloskey. 2011. Adhesive forces in embryonic stem cell cultures. Cell Adh Migr 5: 472-479.
Blancas, A. A., A. J. Shih, N. E. Lauer, and K. E. McCloskey. 2011. Endothelial cells from embryonic stem cells in a chemically defined medium. Stem Cells Dev 20: 2153-2161.
Glaser, D. E., R. M. Gower, N. E. Lauer, K. Tam, A. A. Blancas, A. J. Shih, S. I. Simon, and K. E. McCloskey. 2011. Functional characterization of embryonic stem cell-derived endothelial cells. J Vasc Res 48: 415-428.
Luna, J. I., J. Ciriza, M. E. Garcia-Ojeda, M. Kong, A. Herren, D. K. Lieu, R. A. Li, C. C. Fowlkes, M. Khine, and K. E. McCloskey. 2011. Multiscale biomimetic topography for the alignment of neonatal and embryonic stem cell-derived heart cells. Tissue Eng Part C Methods 17: 579-588.
McLelland, B. T., D. Gravano, J. Castillo, S. Montoy, and J. O. Manilay. 2011. Enhanced isolation of adult thymic epithelial cell subsets for multiparameter flow cytometry and gene expression analysis. J Immunol Methods 367: 85-94.
Smith-Berdan, S., A. Nguyen, D. Hassanein, M. Zimmer, F. Ugarte, J. Ciriza, D. Li, M. E. García-Ojeda, L. Hinck, and E. C. Forsberg. 2011. Robo4 cooperates with CXCR4 to specify hematopoietic stem cell localization to bone marrow niches. Cell Stem Cell 8: 72-83.
Stankovich, B. L., E. Aguayo, F. Barragan, A. Sharma, and M. G. Pallavicini. 2011. Differential adhesion molecule expression during murine embryonic stem cell commitment to the hematopoietic and endothelial lineages. PLoS One 6: e23810.
Zhao, B., M. K. Mankowski, B. A. Snyder, R. G. Ptak, and P. J. Liwang. 2011. Highly potent chimeric inhibitors targeting two steps of HIV cell entry. J Biol Chem 286: 28370-28381.
